Freesurfer Cortical Parcellation

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Inheritance graph

Defined in file : brainvisa/toolboxes/freesurfer/types/freesurfer_types.py

Used in the following processes

Convert Freesurfer images to nifti format

Associated formats

Aperio svs
BMP image
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIF image
GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
PBM image
PGM image
PNG image
PPM image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
VIDA image
XBM image
XPM image
Zeiss czi

Associated ontology rules

  • freesurfer :
    • {subject}/mri/aparc+aseg
    {subject}/mri/aparc+aseg_native
    {subject}/mri/aparc.a2009s+aseg
    {subject}/mri/aparc.a2009s+aseg_native

    Key attributes

  • freesurfer :
    • subject ,  space ,  atlas